Are all three batteries exactly the same? No DC/DC charger? Just the VW split charge relay? Do the leisure batteries ever get fully charged? Are the outputs at the blue dots 1 and 2 ever both active at the same time? What is the (Victron?) Blue box that is between the charge controller and the batteries?
Yes, all batteries are 75Ah AGM batteries, and yes they all stay fully charged.
To charge from the alternator, or the in-built VW charger, the VW isolation relay is closed by the VW special vehicle control unit. It has quite complex behaviour e.g. it is opened during stop/start to stop the leisure batteries being used to start the engine, and closed when hooked up to 220V. This means I needed a charging solution that did not bridge the isolation relay. It could have been done with a DC/DC charger but this setup doesn't need a DC/DC charger.
Yes, both outputs are active at the same time. The blue box (Argofet 100-2) is a battery isolator which takes an input voltage, usually provided by an alternator, but in this case the Victron MPPT, and provides it simultaneously on both outputs. The voltage drop across a FET is far less than the older diode versions so no voltage compensation is needed in the Victron MPPT.
Current then flows (up to the 30A total from the MPPT) to both of the outputs of the Argofet dependent on demand. The field effect transistors and the internal workings of the Argofet prevent current flowing back to the Victron MPPT or from the leisure batteries to starter battery and vice-versa - hence the reason it's called a battery isolator. These devices are normally used to charge two separate battery banks from a one-output alternator without actually connecting them together. Fortunately, as not all alternators are self-exciting and require a positive charge to get them charging, the Argofet has an "energize" connection which when supplied with 12v will supply 12v on the input - using this feature allows the Victron MPPT to function 24/7. It's a bit of a novel use for the component but it works and this usage is hinted at by Victron.
On my boat, I designed and built the charging and solar system to ensure the leisure batteries were properly balanced i.e. they all get exactly the same voltage using equal length cables etc. This was not possible in the bus because of the locations of the batteries and the need to use the VW wiring looms.